Friday, January 01, 2010

Steps to install Shogun

Shogun's a huge collection of machine learning tools implemented in C++ and wrapped for MATLAB use. With help of Chris Hinrichs I started using the package for my work in DTI classification. They keep coming up with new version every so often and I needed a lookup place for the set of steps to perform. It is linux based software and it's not as simple as double clicking a setup.exe

So here's the steps assuming you have limited access on the machines:
  1. Download the latest release from http://svn.tuebingen.mpg.de/shogun/releases/ (As of today the latest version is 0.9.1)
  2. cd download_dir/src
  3. ./configure --interfaces=libshogun,libshogunui,matlab --destdir=install_dir --prefix=local -enable-glpk
  4. make
  5. make install
  6. Edit .bash_profile in your $HOME directory to add the following line export LD_LIBRARY_PATH=/lib:install_dirlocal/lib:$LD_LIBRARY_PATH
  7. In your MATLAB code: addpath('download_dir/src/matlab')

Look into download_dir/examples for examples.

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